Files
Synculous-2/api/routes/medications.py
chelsea 97a166f5aa Fix medication system and rename to Synculous.
- Add all 14 missing database tables (medications, med_logs, routines, etc.)
- Rewrite medication scheduling: support specific days, every N days, as-needed (PRN)
- Fix taken_times matching: match by created_at date, not scheduled_time string
- Fix adherence calculation: taken / expected doses, not taken / (taken + skipped)
- Add formatSchedule() helper for readable display
- Update client types and API layer
- Rename brilli-ins-client → synculous-client
- Make client PWA: add manifest, service worker, icons
- Bind dev server to 0.0.0.0 for network access
- Fix SVG icon bugs in Icons.tsx
- Add .dockerignore for client npm caching

Co-Authored-By: Claude Haiku 4.5 <noreply@anthropic.com>
2026-02-13 03:23:38 -06:00

470 lines
19 KiB
Python

"""
Medications API - medication scheduling, logging, and adherence tracking
"""
import os
import uuid
from datetime import datetime, date, timedelta
import flask
import jwt
from psycopg2.extras import Json
import core.auth as auth
import core.postgres as postgres
def _get_user_uuid(token):
try:
payload = jwt.decode(token, os.getenv("JWT_SECRET"), algorithms=["HS256"])
return payload.get("sub")
except (jwt.ExpiredSignatureError, jwt.InvalidTokenError):
return None
def _auth(request):
"""Extract and verify token. Returns user_uuid or None."""
header = request.headers.get("Authorization", "")
if not header.startswith("Bearer "):
return None
token = header[7:]
user_uuid = _get_user_uuid(token)
if not user_uuid or not auth.verifyLoginToken(token, userUUID=user_uuid):
return None
return user_uuid
_JSON_COLS = {"times", "days_of_week"}
def _wrap_json(data):
"""Wrap list/dict values in Json() for psycopg2 when targeting JSON columns."""
return {k: Json(v) if k in _JSON_COLS and isinstance(v, (list, dict)) else v for k, v in data.items()}
def _is_med_due_today(med, today, current_day):
"""Check if a medication is scheduled for today based on its frequency."""
freq = med.get("frequency", "daily")
if freq in ("daily", "twice_daily"):
return True
if freq == "as_needed":
return True # always show PRN, but with no scheduled times
if freq == "specific_days":
days = med.get("days_of_week", [])
return current_day in days
if freq == "every_n_days":
start = med.get("start_date")
interval = med.get("interval_days")
if start and interval:
start_d = start if isinstance(start, date) else datetime.strptime(str(start), "%Y-%m-%d").date()
days_since = (today - start_d).days
return days_since >= 0 and days_since % interval == 0
return False
return True
def _compute_next_dose_date(med):
"""Compute the next dose date for every_n_days medications."""
interval = med.get("interval_days")
if not interval:
return None
return (date.today() + timedelta(days=interval)).isoformat()
def _count_expected_doses(med, period_start, days):
"""Count expected doses in a period based on frequency and schedule."""
freq = med.get("frequency", "daily")
times_per_day = len(med.get("times", [])) or 1
if freq == "as_needed":
return 0 # PRN has no expected doses
if freq in ("daily", "twice_daily"):
return days * times_per_day
if freq == "specific_days":
dow = med.get("days_of_week", [])
count = 0
for d in range(days):
check_date = period_start + timedelta(days=d)
if check_date.strftime("%a").lower() in dow:
count += times_per_day
return count
if freq == "every_n_days":
interval = med.get("interval_days", 1)
start = med.get("start_date")
if not start:
return 0
start_d = start if isinstance(start, date) else datetime.strptime(str(start), "%Y-%m-%d").date()
count = 0
for d in range(days):
check_date = period_start + timedelta(days=d)
diff = (check_date - start_d).days
if diff >= 0 and diff % interval == 0:
count += times_per_day
return count
return days * times_per_day
def _count_logs_in_period(logs, period_start_str, action):
"""Count logs of a given action where created_at >= period_start."""
return sum(
1 for log in logs
if log.get("action") == action
and str(log.get("created_at", ""))[:10] >= period_start_str
)
def register(app):
# ── Medications CRUD ──────────────────────────────────────────
@app.route("/api/medications", methods=["GET"])
def api_listMedications():
"""List all medications for the logged-in user."""
user_uuid = _auth(flask.request)
if not user_uuid:
return flask.jsonify({"error": "unauthorized"}), 401
meds = postgres.select("medications", where={"user_uuid": user_uuid}, order_by="name")
return flask.jsonify(meds), 200
@app.route("/api/medications", methods=["POST"])
def api_addMedication():
"""Add a medication. Body: {name, dosage, unit, frequency, times?, days_of_week?, interval_days?, start_date?, notes?}"""
user_uuid = _auth(flask.request)
if not user_uuid:
return flask.jsonify({"error": "unauthorized"}), 401
data = flask.request.get_json()
if not data:
return flask.jsonify({"error": "missing body"}), 400
required = ["name", "dosage", "unit", "frequency"]
missing = [f for f in required if not data.get(f)]
if missing:
return flask.jsonify({"error": f"missing required fields: {', '.join(missing)}"}), 400
row = {
"id": str(uuid.uuid4()),
"user_uuid": user_uuid,
"name": data["name"],
"dosage": data["dosage"],
"unit": data["unit"],
"frequency": data["frequency"],
"times": data.get("times", []),
"days_of_week": data.get("days_of_week", []),
"interval_days": data.get("interval_days"),
"start_date": data.get("start_date"),
"notes": data.get("notes"),
"active": True,
}
# Compute next_dose_date for interval meds
if data.get("frequency") == "every_n_days" and data.get("start_date") and data.get("interval_days"):
start = datetime.strptime(data["start_date"], "%Y-%m-%d").date()
today = date.today()
if start > today:
row["next_dose_date"] = data["start_date"]
else:
days_since = (today - start).days
remainder = days_since % data["interval_days"]
if remainder == 0:
row["next_dose_date"] = today.isoformat()
else:
row["next_dose_date"] = (today + timedelta(days=data["interval_days"] - remainder)).isoformat()
med = postgres.insert("medications", _wrap_json(row))
return flask.jsonify(med), 201
@app.route("/api/medications/<med_id>", methods=["GET"])
def api_getMedication(med_id):
"""Get a single medication with its schedule."""
user_uuid = _auth(flask.request)
if not user_uuid:
return flask.jsonify({"error": "unauthorized"}), 401
med = postgres.select_one("medications", {"id": med_id, "user_uuid": user_uuid})
if not med:
return flask.jsonify({"error": "not found"}), 404
return flask.jsonify(med), 200
@app.route("/api/medications/<med_id>", methods=["PUT"])
def api_updateMedication(med_id):
"""Update medication details."""
user_uuid = _auth(flask.request)
if not user_uuid:
return flask.jsonify({"error": "unauthorized"}), 401
data = flask.request.get_json()
if not data:
return flask.jsonify({"error": "missing body"}), 400
existing = postgres.select_one("medications", {"id": med_id, "user_uuid": user_uuid})
if not existing:
return flask.jsonify({"error": "not found"}), 404
allowed = [
"name", "dosage", "unit", "frequency", "times", "notes", "active",
"days_of_week", "interval_days", "start_date", "next_dose_date",
]
updates = {k: v for k, v in data.items() if k in allowed}
if not updates:
return flask.jsonify({"error": "no valid fields to update"}), 400
result = postgres.update("medications", _wrap_json(updates), {"id": med_id, "user_uuid": user_uuid})
return flask.jsonify(result[0] if result else {}), 200
@app.route("/api/medications/<med_id>", methods=["DELETE"])
def api_deleteMedication(med_id):
"""Delete a medication and its logs."""
user_uuid = _auth(flask.request)
if not user_uuid:
return flask.jsonify({"error": "unauthorized"}), 401
existing = postgres.select_one("medications", {"id": med_id, "user_uuid": user_uuid})
if not existing:
return flask.jsonify({"error": "not found"}), 404
postgres.delete("med_logs", {"medication_id": med_id})
postgres.delete("medications", {"id": med_id, "user_uuid": user_uuid})
return flask.jsonify({"deleted": True}), 200
# ── Medication Logging (take / skip / snooze) ─────────────────
@app.route("/api/medications/<med_id>/take", methods=["POST"])
def api_takeMedication(med_id):
"""Log that a dose was taken. Body: {scheduled_time?, notes?}"""
user_uuid = _auth(flask.request)
if not user_uuid:
return flask.jsonify({"error": "unauthorized"}), 401
med = postgres.select_one("medications", {"id": med_id, "user_uuid": user_uuid})
if not med:
return flask.jsonify({"error": "not found"}), 404
data = flask.request.get_json() or {}
log_entry = {
"id": str(uuid.uuid4()),
"medication_id": med_id,
"user_uuid": user_uuid,
"action": "taken",
"scheduled_time": data.get("scheduled_time"),
"notes": data.get("notes"),
}
log = postgres.insert("med_logs", log_entry)
# Advance next_dose_date for interval meds
if med.get("frequency") == "every_n_days" and med.get("interval_days"):
next_date = _compute_next_dose_date(med)
if next_date:
postgres.update("medications", {"next_dose_date": next_date}, {"id": med_id})
return flask.jsonify(log), 201
@app.route("/api/medications/<med_id>/skip", methods=["POST"])
def api_skipMedication(med_id):
"""Log a skipped dose. Body: {scheduled_time?, reason?}"""
user_uuid = _auth(flask.request)
if not user_uuid:
return flask.jsonify({"error": "unauthorized"}), 401
med = postgres.select_one("medications", {"id": med_id, "user_uuid": user_uuid})
if not med:
return flask.jsonify({"error": "not found"}), 404
data = flask.request.get_json() or {}
log_entry = {
"id": str(uuid.uuid4()),
"medication_id": med_id,
"user_uuid": user_uuid,
"action": "skipped",
"scheduled_time": data.get("scheduled_time"),
"notes": data.get("reason"),
}
log = postgres.insert("med_logs", log_entry)
# Advance next_dose_date for interval meds
if med.get("frequency") == "every_n_days" and med.get("interval_days"):
next_date = _compute_next_dose_date(med)
if next_date:
postgres.update("medications", {"next_dose_date": next_date}, {"id": med_id})
return flask.jsonify(log), 201
@app.route("/api/medications/<med_id>/snooze", methods=["POST"])
def api_snoozeMedication(med_id):
"""Snooze a reminder. Body: {minutes: 15}"""
user_uuid = _auth(flask.request)
if not user_uuid:
return flask.jsonify({"error": "unauthorized"}), 401
med = postgres.select_one("medications", {"id": med_id, "user_uuid": user_uuid})
if not med:
return flask.jsonify({"error": "not found"}), 404
data = flask.request.get_json() or {}
minutes = data.get("minutes", 15)
return flask.jsonify({"snoozed_until_minutes": minutes}), 200
# ── Medication Log / History ──────────────────────────────────
@app.route("/api/medications/<med_id>/log", methods=["GET"])
def api_getMedLog(med_id):
"""Get dose log for a medication. Query: ?days=30"""
user_uuid = _auth(flask.request)
if not user_uuid:
return flask.jsonify({"error": "unauthorized"}), 401
med = postgres.select_one("medications", {"id": med_id, "user_uuid": user_uuid})
if not med:
return flask.jsonify({"error": "not found"}), 404
days = flask.request.args.get("days", 30, type=int)
logs = postgres.select(
"med_logs",
where={"medication_id": med_id},
order_by="created_at DESC",
limit=days * 10,
)
return flask.jsonify(logs), 200
@app.route("/api/medications/today", methods=["GET"])
def api_todaysMeds():
"""Get today's medication schedule with taken/pending status."""
user_uuid = _auth(flask.request)
if not user_uuid:
return flask.jsonify({"error": "unauthorized"}), 401
meds = postgres.select("medications", where={"user_uuid": user_uuid, "active": True})
now = datetime.now()
today = date.today()
today_str = today.isoformat()
current_day = now.strftime("%a").lower() # "mon","tue", etc.
result = []
for med in meds:
if not _is_med_due_today(med, today, current_day):
continue
freq = med.get("frequency", "daily")
is_prn = freq == "as_needed"
# Get today's taken times by filtering on created_at date
all_logs = postgres.select(
"med_logs",
where={"medication_id": med["id"], "action": "taken"},
)
today_taken = [
log.get("scheduled_time", "")
for log in all_logs
if str(log.get("created_at", ""))[:10] == today_str
]
result.append({
"medication": med,
"scheduled_times": [] if is_prn else med.get("times", []),
"taken_times": today_taken,
"is_prn": is_prn,
})
return flask.jsonify(result), 200
# ── Adherence Stats ───────────────────────────────────────────
@app.route("/api/medications/adherence", methods=["GET"])
def api_adherenceStats():
"""Get adherence stats across all meds. Query: ?days=30"""
user_uuid = _auth(flask.request)
if not user_uuid:
return flask.jsonify({"error": "unauthorized"}), 401
num_days = flask.request.args.get("days", 30, type=int)
meds = postgres.select("medications", where={"user_uuid": user_uuid, "active": True})
today = date.today()
period_start = today - timedelta(days=num_days)
period_start_str = period_start.isoformat()
result = []
for med in meds:
freq = med.get("frequency", "daily")
is_prn = freq == "as_needed"
expected = _count_expected_doses(med, period_start, num_days)
logs = postgres.select("med_logs", where={"medication_id": med["id"]})
taken = _count_logs_in_period(logs, period_start_str, "taken")
skipped = _count_logs_in_period(logs, period_start_str, "skipped")
if is_prn:
adherence_pct = None
elif expected > 0:
adherence_pct = round(min(taken / expected * 100, 100), 1)
else:
adherence_pct = 0
result.append({
"medication_id": med["id"],
"name": med["name"],
"taken": taken,
"skipped": skipped,
"expected": expected,
"adherence_percent": adherence_pct,
"is_prn": is_prn,
})
return flask.jsonify(result), 200
@app.route("/api/medications/<med_id>/adherence", methods=["GET"])
def api_medAdherence(med_id):
"""Get adherence stats for a single medication. Query: ?days=30"""
user_uuid = _auth(flask.request)
if not user_uuid:
return flask.jsonify({"error": "unauthorized"}), 401
med = postgres.select_one("medications", {"id": med_id, "user_uuid": user_uuid})
if not med:
return flask.jsonify({"error": "not found"}), 404
num_days = flask.request.args.get("days", 30, type=int)
today = date.today()
period_start = today - timedelta(days=num_days)
period_start_str = period_start.isoformat()
freq = med.get("frequency", "daily")
is_prn = freq == "as_needed"
expected = _count_expected_doses(med, period_start, num_days)
logs = postgres.select("med_logs", where={"medication_id": med_id})
taken = _count_logs_in_period(logs, period_start_str, "taken")
skipped = _count_logs_in_period(logs, period_start_str, "skipped")
if is_prn:
adherence_pct = None
elif expected > 0:
adherence_pct = round(min(taken / expected * 100, 100), 1)
else:
adherence_pct = 0
return flask.jsonify({
"medication_id": med_id,
"name": med["name"],
"taken": taken,
"skipped": skipped,
"expected": expected,
"adherence_percent": adherence_pct,
"is_prn": is_prn,
}), 200
# ── Refills ───────────────────────────────────────────────────
@app.route("/api/medications/<med_id>/refill", methods=["PUT"])
def api_setRefill(med_id):
"""Set refill info. Body: {quantity_remaining, refill_date?, pharmacy_notes?}"""
user_uuid = _auth(flask.request)
if not user_uuid:
return flask.jsonify({"error": "unauthorized"}), 401
med = postgres.select_one("medications", {"id": med_id, "user_uuid": user_uuid})
if not med:
return flask.jsonify({"error": "not found"}), 404
data = flask.request.get_json()
if not data:
return flask.jsonify({"error": "missing body"}), 400
allowed = ["quantity_remaining", "refill_date", "pharmacy_notes"]
updates = {k: v for k, v in data.items() if k in allowed}
if not updates:
return flask.jsonify({"error": "no valid fields to update"}), 400
result = postgres.update("medications", updates, {"id": med_id, "user_uuid": user_uuid})
return flask.jsonify(result[0] if result else {}), 200
@app.route("/api/medications/refills-due", methods=["GET"])
def api_refillsDue():
"""Get medications that need refills soon. Query: ?days_ahead=7"""
user_uuid = _auth(flask.request)
if not user_uuid:
return flask.jsonify({"error": "unauthorized"}), 401
days_ahead = flask.request.args.get("days_ahead", 7, type=int)
cutoff = (datetime.now() + timedelta(days=days_ahead)).strftime("%Y-%m-%d")
meds = postgres.select(
"medications",
where={"user_uuid": user_uuid},
)
due = []
for med in meds:
qty = med.get("quantity_remaining")
refill_date = med.get("refill_date")
if qty is not None and qty <= 7:
due.append(med)
elif refill_date and str(refill_date) <= cutoff:
due.append(med)
return flask.jsonify(due), 200